TL;DR: If your computer won't let you enter BIOS setup, try clearing the CMOS.
I had a faulty 2.5 inch hard drive that I wanted to try installing a fresh copy of Windows. I opened up my MSI Wind U100 Netbook and replaced its hard drive with the faulty one. Being a netbook, it didn't have an optical drive, but I had a bootable Windows 7 USB thumb drive, so I plugged that in. Now I needed to go into BIOS to change the boot order. I turned on the netbook and waited for BIOS key prompt to show up during POST, but there was no such prompt, and it proceeded to boot from the faulty drive. I rebooted and tried pressing the DEL key, since I vaguely remembered it being the key to enter the BIOS. No luck. I rebooted several times and tried various other keys that I could think of, but none of them worked. I hunted down the manual for the netbook and confirmed that it was the DEL key...so tried it again, many times, but still no luck.
I was about admit defeat, so I opened up the netbook to take out the faulty drive, but noticed the CMOS battery connection. Just out of curiosity (and since BIOS settings are preserved via CMOS), I unplugged the CMOS battery cable and then plugged it in again. I booted up the netbook, it showed the DEL key information and I was able to enter BIOS setup! Why did this happen? One thing I remembered was that I put the netbook on hibernation when I shutdown before I switched out the drives. So to test my theory I tried hibernating and shutting down normally. If you put it on hibernation, it remembers that and will not let you go into BIOS! BTW, the BIOS is Aptio by American Megatrends.
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